# molecular id of copepod gut contents # W. Kimmerer (SFSU) # version: 2015-01-15 # Note: These data were published in Craig et al, JPR 2014 # ========================= station date ------------------------- D6 2008-10-10 ========================= sequence_id contig_name stage copepod_sp taxon_Perl taxon_level_Perl taxon_Claident taxon_level_Claident taxon_notes_Claident min_identity_SAP posterior_prob_100_SAP taxon_level_100_SAP posterior_prob_95_100_SAP taxon_level_95_100_SAP probability warning_comment ------------------------- TDF152_1 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF152_10 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF152_11 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF152_12 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF152_2 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF152_3 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF152_4 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF152_5 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF152_6 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF152_7 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF152_8 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF152_9 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF154_1 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF154_11 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF154_12 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF154_13 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF154_14 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF154_2 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF154_3 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF154_4 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF154_5 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF154_6 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF154_7 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF154_8 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF155_1 contig22 C6 nd Pleurobrachiidae family Pleurobrachiidae family nd >0.95 Pleurobrachiidae family nd nd nd nd TDF155_10 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF155_11 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF155_12 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF155_13 nd C6 Limnoithona_tetraspina nd nd nd nd nd nd nd nd nd nd nd nd TDF155_15 contig22 C6 nd Pleurobrachiidae family Pleurobrachiidae family nd >0.95 Pleurobrachiidae family nd nd nd nd TDF155_16 nd C6 Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDF155_3 nd C6 Limnoithona_tetraspina nd nd nd nd nd nd nd nd nd nd nd nd TDF155_4 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF155_5 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF155_7_Sinocalanus spliced C6 Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDF155_8 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF155_9_flagellate_cercozoan? nd C6 nd Eukaryota superkingdom Eukaryota superkingdom clean_sequence 0.88 Eukaryota superkingdom Protaspis genus 99% nd TDF156_1 contig06 C6 nd Peritrichia subclass Zoothamnium genus nd >0.95 Zoothamnium genus nd nd nd nd TDF156_11 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF156_14 contig06_was44 C6 nd Peritrichia subclass Zoothamnium genus nd >0.95 Zoothamnium genus nd nd nd nd TDF156_19 contig06 C6 nd Peritrichia subclass Zoothamnium genus nd >0.95 Zoothamnium genus nd nd nd nd TDF156_20 contig06 C6 nd Peritrichia subclass Zoothamnium genus nd >0.95 Zoothamnium genus nd nd nd nd TDF156_21 contig06 C6 nd Peritrichia subclass Zoothamnium genus nd >0.95 Zoothamnium genus nd nd nd nd TDF156_22 contig06 C6 nd Peritrichia subclass Zoothamnium genus nd >0.95 Zoothamnium genus nd nd nd nd TDF156_3 contig06 C6 nd Peritrichia subclass Zoothamnium genus nd >0.95 Zoothamnium genus nd nd nd nd TDF156_4 contig06 C6 nd Peritrichia subclass Zoothamnium genus nd >0.95 Zoothamnium genus nd nd nd nd TDF156_4_Zoothamnium contig06 C6 nd Peritrichia subclass Zoothamnium genus nd 0.94 Zoothamnium genus nd nd nd nd TDF156_6 contig06 C6 nd Peritrichia subclass Zoothamnium genus nd >0.95 Zoothamnium genus nd nd nd nd TDF156_7 contig06 C6 nd Peritrichia subclass Zoothamnium genus nd >0.95 Zoothamnium genus nd nd nd nd TDF156_9 contig06_was44 C6 nd Peritrichia subclass Zoothamnium genus nd >0.95 Zoothamnium genus nd nd nd nd TDF157_1_Limnoithona nd C6 Limnoithona_tetraspina nd nd nd nd nd nd nd nd nd nd nd nd TDF157_10 contig28 C6 nd Bacillariophyta phylum Bacillariophyta phylum nd >0.95 Eucampia genus nd nd nd nd TDF157_14_DiatomA_Cyclotella nd C6 nd Thalassiosirales subclass Bacillariophyta phylum nd >0.95 Cyclotella genus nd nd nd nd TDF157_15 nd C6 Limnoithona_tetraspina nd nd nd nd nd nd nd nd nd nd nd nd TDF157_16 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF157_17 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF157_18 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF157_19 contig28 C6 nd Bacillariophyta phylum Bacillariophyta phylum nd >0.95 Eucampia genus nd nd nd nd TDF157_20 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF157_3 nd C6 Limnoithona_tetraspina nd nd nd nd nd nd nd nd nd nd nd nd TDF157_6 nd C6 Limnoithona_tetraspina nd nd nd nd nd nd nd nd nd nd nd nd TDF157_9 contig04 C6 nd Phyllodocida order Polynoidae family nd >0.95 Polynoidae family nd nd nd nd TDF158_1 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF158_10 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF158_11 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF158_12 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF158_2 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF158_3 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF158_4 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF158_5 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF158_6 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF158_7_selection nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF158_8 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF158_9_trimmed nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF160_1 nd C6 Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDF160_11 contig04 C6 nd Phyllodocida order Polynoidae family nd >0.95 Polynoidae family nd nd nd nd TDF160_13 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF160_14 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF160_19 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF160_2 nd C6 Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDF160_20 contig37 C6 nd Liposcelidae family Liposcelis genus 97-100%_identity >0.95 Liposcelidae family nd nd nd nd TDF160_21 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF160_22 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF160_3 nd C6 Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDF160_4 nd C6 Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDF160_7 contig28 C6 nd Bacillariophyta phylum Bacillariophyta phylum nd >0.95 Eucampia genus nd nd nd nd TDF161_1 contig33 C6 nd Pezizomycotina subphylum Ascomycota phylum nd >0.95 Pezizomycotina subphylum nd nd nd nd TDF161_10 contig04 C6 nd Phyllodocida order Polynoidae family nd >0.95 Polynoidae family nd nd nd nd TDF161_11 contig19 C6 nd Metazoa--Env._Samples kingdom Oikopleuridae family nd >0.95 Oikopleura genus nd nd nd nd TDF161_12 contig33 C6 nd Pezizomycotina subphylum Ascomycota phylum nd >0.95 Pezizomycotina subphylum nd nd nd nd TDF161_13_fungus_typeB nd C6 nd Pezizomycotina subphylum Ascomycota phylum nd >0.95 Pezizomycotina subphylum nd nd nd nd TDF161_2 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF161_3 contig19 C6 nd Metazoa--Env._Samples kingdom Oikopleuridae family nd >0.95 Oikopleura genus nd nd nd nd TDF161_4_wasp nd C6 nd Arthropoda phylum Arthropoda phylum nd 0.85 Arthropoda phylum nd nd nd nd TDF161_6 contig19 C6 nd Metazoa--Env._Samples kingdom Oikopleuridae family nd >0.95 Oikopleura genus nd nd nd nd TDF161_7_Oithona_splicedwithOiko spliced C6 Oithona_davisae_and_other nd nd nd nd nd nd nd nd nd nd nd nd TDF161_8 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF161_9 contig33 C6 nd Pezizomycotina subphylum Ascomycota phylum nd >0.95 Pezizomycotina subphylum nd nd nd nd TDF162_1_ciliate nd C6 nd Strombidinopsis genus Strombidinopsis_acuminata species 99%_identity >0.95 Strombidinopsis genus nd nd nd nd TDF162_10_Limno nd C6 Limnoithona_tetraspina nd nd nd nd nd nd nd nd nd nd nd nd TDF162_15 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF162_16 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF162_2 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF162_3 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF162_5_Oithona nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF162_6_piece1 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF162_6_piece1_Acartia1 spliced C6 Acartia1_and_Acartiella nd nd nd nd nd nd nd nd nd nd nd nd TDF162_7_Oithona_Acartia1_splice spliced C6 Acartia1_and_Oithona nd nd nd nd nd nd nd nd nd nd nd nd TDF162_7_piece_Acartia nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF162_8_Oithona nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF162_9_Limno_Oitho_splice spliced C6 Limnoithona_and_Oithona nd nd nd nd nd nd nd nd nd nd nd nd TDF163_10 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF163_11 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF163_12 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF163_13 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF163_14 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF163_2_Oithona nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF163_3_Oithona nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF163_4 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF163_5 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF163_6 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF163_7 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF163_9 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF165_10 nd C6 Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDF165_11 nd C6 Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDF165_12 contig37 C6 nd Liposcelidae family Liposcelis genus 97-100%_identity >0.95 Liposcelidae family nd nd nd nd TDF165_14 nd C6 Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDF165_15 nd C6 Limnoithona_tetraspina nd nd nd nd nd nd nd nd nd nd nd nd TDF165_16_Limnoithona_Acartia1_splice spliced C6 Acartia1_and_Limnoithona nd nd nd nd nd nd nd nd nd nd nd nd TDF165_16_piece_Acartia nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF165_2 nd C6 Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDF165_3 nd C6 Limnoithona_tetraspina nd nd nd nd nd nd nd nd nd nd nd nd TDF165_4_Limnoithona nd C6 Limnoithona_tetraspina nd nd nd nd nd nd nd nd nd nd nd nd TDF165_7 nd C6 Limnoithona_tetraspina nd nd nd nd nd nd nd nd nd nd nd nd TDF165_8 nd C6 Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDF165_9_piece_jelly nd C6 nd Leptomedusae suborder Leptomedusae suborder nd >0.95 Leptomedusae suborder nd nd nd nd TDF165_9_piece_Limno nd C6 Limnoithona_tetraspina nd nd nd nd nd nd nd nd nd nd nd nd TDF166_1 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF166_10 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF166_11 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF166_12 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF166_13_Acartia nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF166_14_Acartia nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF166_2 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF166_3 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF166_4 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF166_6 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF166_7 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF166_8 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDF166_9 nd C6 Acartia1 nd nd nd nd nd nd nd nd nd nd nd nd TDN29_1_Oithona nd N Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDN29_10 contig04_naup N nd Spermatophyta superphylum Asteraceae class nd >0.95 Asterids subclass Dipsacales order 97% nd TDN29_13 contig53_naup N Oithona_davisae nd nd nd nd nd nd nd nd nd nd nd nd TDN29_14 nd N Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDN29_15 contig21_naup N Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDN29_16 contig26_naup N Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDN29_2_Cyclotella_diatom nd N nd Thalassiosirales order Bacillariophyta phylum nd >0.95 Coscinodiscophyceae class Cyclotella genus 99% some_warnings TDN29_21 contig04_naup N nd Spermatophyta superphylum Asteraceae class nd >0.95 Asterids subclass Dipsacales order 97% nd TDN29_23 contig04_naup N nd Spermatophyta superphylum Asteraceae class nd >0.95 Asterids subclass Dipsacales order 97% nd TDN29_25 contig04_naup N nd Spermatophyta superphylum Asteraceae class nd >0.95 Asterids subclass Dipsacales order 97% nd TDN29_29 nd N nd Thalassiosirales order Bacillariophyta phylum nd >0.95 Cyclotella genus nd nd nd nd TDN29_3 contig04_naup N nd Spermatophyta superphylum Asteraceae class nd >0.95 Asterids subclass Dipsacales order 97% nd TDN29_34 contig21_naup N Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDN29_41 contig04_naup N nd Spermatophyta superphylum Asteraceae class nd >0.95 Asterids subclass Dipsacales order 97% nd TDN29_43 contig04_naup N nd Spermatophyta superphylum Asteraceae class nd >0.95 Asterids subclass Dipsacales order 97% nd TDN29_44 contig04_naup N nd Spermatophyta superphylum Asteraceae class nd >0.95 Asterids subclass Dipsacales order 97% nd TDN29_46 contig04_naup N nd Spermatophyta superphylum Asteraceae class nd >0.95 Asterids subclass Dipsacales order 97% nd TDN29_49 nd N Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDN29_5 contig12_naup N Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDN29_56 contig04_naup N nd Spermatophyta superphylum Asteraceae class nd >0.95 Asterids subclass Dipsacales order 97% nd TDN29_6_firsttime contig21_naup N Tortanus_dextrilobatus nd nd nd nd nd nd nd nd nd nd nd nd TDN29_6_seastar nd N nd Asteroidea class Asteriidae family nd >0.95 Asteriidae family nd nd nd nd